Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs7911024 chr10:27433636 A/C 5.84E-5 506 19.15 20.5 24.53 KM Plot
LGG rs79129577 chr6:53167449 G/A 2.5E-5 509 22.6 21.6 14.8 KM Plot
LGG rs7914758 chr10:891702 T/C 3.91E-6 508 21.7 25.18 14.43 KM Plot
LGG rs7915902 chr10:27410734 T/C 7.67E-5 507 19.15 20.43 24.53 KM Plot
LGG rs79180290 chr3:153669314 T/C 4.72E-12 507 22.57 22.78 7.37 KM Plot
LGG rs7918619 chr10:101465780 A/G 7.14E-5 509 21.77 23.83 16.4 KM Plot
LGG rs79198031 chr5:157011699 T/C 3.73E-6 488 21.78 24.07 8.03 KM Plot
LGG rs79379486 chr5:168965247 G/T 1.46E-8 509 22.37 23.63 6.83 KM Plot
LGG rs79418643 chr5:168981745 C/T 1.43E-8 509 21.87 24.07 6.83 KM Plot
LGG rs79453591 chr3:53277859 C/A 3.8E-8 507 21.7 27.25 10.97 KM Plot
LGG rs79648456 chr3:53335720 C/T 5.03E-8 501 21.83 24.65 10.97 KM Plot
LGG rs79719779 chr6:88256632 A/C 5.05E-6 505 22.58 24.5 4.08 KM Plot
LGG rs79738227 chr6:53148251 T/C 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs79960518 chr3:153665963 T/C 0 508 22.58 22.73 0.23 KM Plot
LGG rs8003491 chr14:24410030 G/T 1.2E-5 509 23.53 21.15 13.23 KM Plot